- Yabe, A., Jeong, E.-K., Kim, K.-S., Uemura, K. (in press) Oligocene–Neogene fossil history of Asian endemic conifer genera in Japan and Korea. Journal of Systematics and Evolution. https://doi.org/10.1111/jse.12445.
- Yabe, A., Nakagawa, T., 2018. A new legume fruit species from the mid-Miocene Climatic Optimum in Japan. Review of Palaeobotany and Palynology, 257: 35-42.
- Yabe, A., 2017. Revision of the early Pleistocene Minoshirotori flora in the plant fossil collection of the National Museum of Nature and Science, Tokyo. Bulletin of the National Museum of Nature and Science, Series C, 43: 65-89.
- Yabe, A. and Yamakawa, C., 2017. Revision of Cunninghamia protokonishii Tanai et Onoe (Coniferae, Cupressaceae) from East Asia. Paleontological Research, 21(4): 309-328.
- 成田敦史・矢部 淳・松本みどり・植村和彦, 2017. 北海道下川町上名寄から産出する中新統パンケ層産植物化石群集の古植生解析. 地質学雑誌, 123 (3): 131-145.
- Sano, S.-I. and Yabe, A., 2017. Fauna and flora of Early Cretaceous Tetori Group in Central Japan: The clues to revealing the evolution of Cretaceous terrestrial ecosystem in East Asia. Palaeoworld, 26: 253-267.
- 矢部 淳, 2016.日本の新植代植物化石研究の現状と今後の展望. 化石, no. 100: 69-79.
- Ohsawa, T. A., Yabe, A., Yamada, T., Uemura, K., Terada, K., Leppe, M., Hinojosa, L. F. and Nishida, H., 2016. Araucarian leaves and cone scales from the Loreto Formation of Río de Las Minas, Magellan Region, Chile. Botany, 94: 805-815.
- Xing, Y., Gandolfo, M. A., Onstein, R. E., Cantrill, D. J., Jacobs, B. F., Jordan, G. J., Lee, D. E., Popova, S., Srivastava, R., Tao S., Vikulin, S. V., Yabe, A. and Linder, P., 2016. Testing the biases in the rich Cenozoic angiosperm macrofossil record. International Journal of Plant Sciences, 177(4): DOI: 10.1086/685388.
- Pavlyutkin, B. I., Yabe, A., Golozoubov, V. V., and Simanenko, L. F., 2016. Miocene Floral Changes in the Circum-Japan Sea Areas―Their Implications in the Climatic Changes and the Time of Japan Sea Opening. Memoir of the National Museum of Nature and Science, no. 51, 109-123.
- Hinojosa, L. F., Gaxiola, A., Pérez, M. F., Carvajal, F., Campano, M. F., Quattrocchio, M., Nishida, H., Uemura, K., Yabe, A., Bustamante, R. and Arroyo, M. K., 2015. Non congruent fossil and phylogenetic evidence on the evolution of the climate niche in the Gondwana genus Nothofagus. Journal of Biogeography, DOI: 10.1111/jbi.12650.
- 矢部 淳, 2014. ドイツ・ゼンケンベルグ自然史博物館で進められている博物館統合の取り組み. 博物館研究, 49 (11): 22-24.
- Legrand, J., D. Pons, K. Terada, A. Yabe, and H. Nishida. 2013. Lower Cretaceous (upper Barremian-lower Aptian?) palynoflora from the Kitadani Formation (Tetori Group, Inner Zone of central Japan). Paleontological Research, 17: 201-229.
- 成田敦史・植村和彦・松本みどり・矢部 淳. 2012. 北海道士別市北西、湖南から産出する中期中新世植物化石群. 化石 (92): 5-18.
- 矢部 淳・柴田正輝. 2011. 手取層群北谷層(下部白亜系)から産出した針葉樹枝条化石Brachyphyllumの産状と古生態.福井県立恐竜博物館紀要, (10): 77-88.
- 寺田和雄・矢部 淳. 2011. 福井県勝山市杉山川から発見された白亜紀の針葉樹材化石. 福井県立恐竜博物館紀要, (10): 89-102.
- Yabe, A. 2011. Pseudotsuga tanaii Huzioka from the earliest Miocene Shichiku Flora of northeast Japan: Systematics and ecological conditions. Paleontological Research, 15: 1-11.
- Shimada, M., Y. Noda, S. Hayashi, Y. Azuma, A. Yabe and K. Terada. 2010. Late Jurassic to Early Cretaceous dinosaur and bird footprints from the Tetori Group in Fukui City, Fukui Prefecture, Japan. Memoir of the Fukui Prefectural Dinosaur Museum, (9): 47-54.
- Yabe, A. 2008. Early Miocene terrestrial climate inferred from plant megafossil assemblages of the Joban and Soma areas, Northeast Honshu, Japan. Bulletin of the Geological Survey of Japan, 59 (7/8): 97-113.
- Yabe, A. 2008. Plant megafossil assemblage from the Lower Miocene Ito-o Formation, Fukui Prefecture, Central Japan. Memoir of the Fukui Prefectural Dinosaur Museum, (7): 1-24.
- 矢部 淳. 2008. 福井県立恐竜博物館における虫菌害モニタリング調査と防虫・防カビ対策. 福井県立恐竜博物館紀要, (7): 117-125.
- Sano, S., K. Kubota and A. Yabe. 2008. The Cretaceous Tetori biota in Japan and its evolutionary significance for terrestrial ecosystems in Asia” [Cretaceous Research 26 (2006) 199–225]―Discussion. Cretaceous Research, 29: 168–173.
- Hinojosa, L. F., O. Pesce, A. Yabe, K. Uemura and H. Nishida. 2006. Physiognomical analysis and paleoclimate from Ligorio Marquez fossil floras, Ligorio Marquez Formation, 46°45'S, Chile; pp. 45–55 in Nishida, H. (ed.), Post-Cretaceous floristic changes in southern Patagonia, Chile. Chuo University, Tokyo.
- Okuda M., H. Nishida, K. Uemura and A. Yabe. 2006. Paleocene/Eocene pollen assemblages from the Ligorio Marquez Formation, central Patagonia, XI Region, Chile; pp. 37–43 in Nishida, H. (ed.), Post-Cretaceous floristic changes in southern Patagonia, Chile. Chuo University, Tokyo.
- Yabe, A., K. Uemura and H. Nishida. 2006. Geological notes on the plant fossil localities of the Ligorio Marquez Formation, central Patagonia, Chile; pp. 29–35 in Nishida, H. (ed.), Post-Cretaceous floristic changes in southern Patagonia, Chile. Chuo University, Tokyo.
- Yabe A., K. Uemura, H. Nishida and T. Yamada. 2006. Geological notes on the plant megafossil localities at Cerro Guido, Ultima Esperanza, Magallanes (XII) Region, Chile; pp. 5–10 in Nishida, H. (ed.), Post-Cretaceous floristic changes in southern Patagonia, Chile. Chuo University, Tokyo.
- Yabe, A., and K. Kubota. 2004. Brachyphyllum obesum, newly discovered thermophilic conifer branch from the Lower Cretaceous Kitadani Formation of the Tetori Group, Central Japan. Memoir of the Fukui Prefectural Dinosaur Museum, (3): 23–29.
- Okuda M., H. Nishida, K. Uemura, A. Yabe, T. Yamada and H. R. Miguel. 2004. Palynological investigation and implications on the relationship between surface pollen and vegetation/climate (especially precipitation) in the Riesco Island (Isla Riesco), subantarctic Patagonia (Tierra del Fuego), Chile. Natural History Research, 8: 1–11.
- Yabe, A., K. Terada and S. Sekido. 2003. The Tetori-type flora, revisited: A review. Memoir of the Fukui Prefectural Dinosaur Museum, (2): 23–42.
- 矢部 淳. 2002. 大型植物化石から推定されるタイ北部第三紀の古気候. 霊長類研究, 18: 143-157.